- recipe r-pathwaytmb
A systematic bioinformatics tool to develop a new pathway-based gene panel for tumor mutational burden (TMB) assessment (pathway-based tumor mutational burden, PTMB), using somatic mutations files in an efficient manner from either The Cancer Genome Atlas sources or any in-house studies as long as the data is in mutation annotation file (MAF) format. Besides, we develop a multiple machine learning method using the sample's PTMB profiles to identify cancer-specific dysfunction pathways, which can be a biomarker of prognostic and predictive for cancer immunotherapy.
- Homepage:
- License:
GPL2 / GPL-2.0-or-later
- Recipe:
- package r-pathwaytmb¶
-
- Versions:
0.1.3-1
,0.1.3-0
,0.1.2-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-pathwaytmb
and update with:
conda update r-pathwaytmb
or use the docker container:
docker pull quay.io/biocontainers/r-pathwaytmb:<tag>
(see r-pathwaytmb/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-pathwaytmb/README.html)