recipe r-phyext2

Based on (but not identical to) the no-longer-maintained package 'phyext', provides enhancements to 'phylobase' classes, specifically for use by package 'SigTree'; provides classes and methods which help users manipulate branch-annotated trees (as in 'SigTree'); also provides support for a few other extra features.



GPL3 / GPL-3



package r-phyext2

(downloads) docker_r-phyext2



depends r-ape:

depends r-base:


depends r-phylobase:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-phyext2

and update with::

   mamba update r-phyext2

To create a new environment, run:

mamba create --name myenvname r-phyext2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `r-phyext2/tags`_ for valid values for ``<tag>``)

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