recipe r-pophelper

A set of useful functions for processing admixture proportion files from the population structure analysis softwares STRUCTURE, TESS, ADMIXTURE, BAPS, fastSTRUCTURE etc. The package contains functions to read runs, tabulate runs, summarise runs, plot runs, estimate K using Evanno method, export clumpp files, export distruct files and generate barplots.

Homepage:

https://github.com/royfrancis/pophelper

License:

GPL3 / GPL-3

Recipe:

/r-pophelper/meta.yaml

package r-pophelper

(downloads) docker_r-pophelper

versions:

2.3.1-4,  2.3.1-3,  2.3.1-2,  2.3.1-1,  2.3.1-0,  2.3.0-1,  2.3.0-0,  2.2.7-0

depends r-base:

>=4.3,<4.4.0a0

depends r-cairo:

depends r-ggplot2:

depends r-gridextra:

depends r-gtable:

depends r-label.switching:

depends r-tidyr:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-pophelper

and update with::

   mamba update r-pophelper

To create a new environment, run:

mamba create --name myenvname r-pophelper

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-pophelper:<tag>

(see `r-pophelper/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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