recipe r-pore

An R package to enable organisation and visualisation of nanopore sequencing data

Homepage:

http://sourceforge.net/projects/rpore/

License:

BSD

Recipe:

/r-pore/meta.yaml

package r-pore

versions:

0.24-7,  0.24-6,  0.24-5,  0.24-4,  0.24-3,  0.24-2,  0.24-0,  0.16-0

depends bioconductor-rhdf5:

>=2.50.0,<2.51.0a0

depends parallel:

depends r-base:

>=4.4,<4.5.0a0

depends r-bit64:

depends r-data.table:

depends r-shiny:

depends r-svdialogs:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-pore

and update with::

   mamba update r-pore

To create a new environment, run:

mamba create --name myenvname r-pore

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-pore:<tag>

(see `r-pore/tags`_ for valid values for ``<tag>``)

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