recipe r-qorts

QoRTs toolkit for analysis, quality control, and data management of RNA-Seq datasets.



Public Domain



package r-qorts

(downloads) docker_r-qorts



depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-qorts

and update with::

   mamba update r-qorts

To create a new environment, run:

mamba create --name myenvname r-qorts

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `r-qorts/tags`_ for valid values for ``<tag>``)


This package is a requirement of the main QoRTs package; "qorts".

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