recipe r-ramclustr

A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. This method is compatible with gas and liquid chromatography coupled mass spectrometry, including indiscriminant tandem mass spectrometry data <DOI: 10.1021/ac501530d>.

Homepage:

https://github.com/cbroeckl/RAMClustR

License:

GPL2 / GPL-2.0-or-later

Recipe:

/r-ramclustr/meta.yaml

package r-ramclustr

Versions:

1.3.0-0,  1.2.4-1,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-1,  1.2.1-0,  1.0.9-1,  1.0.9-0

Depends:

• bioconductor-msnbase

• bioconductor-pcamethods

• bioconductor-preprocesscore

• r-base >=4.2,<4.3.0a0

• r-biocmanager

• r-dynamictreecut

• r-e1071

• r-fastcluster

• r-ff

• r-ggplot2

• r-gplots

• r-httr

• r-interpretmsspectrum

• r-jsonlite

• r-rcurl

• r-readxl

• r-stringi

• r-stringr

• r-webchem

• r-xml2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-ramclustr

and update with:

conda update r-ramclustr

or use the docker container:

docker pull quay.io/biocontainers/r-ramclustr:<tag>

(see r-ramclustr/tags for valid values for <tag>)

Download stats

Link to this page

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