recipe r-seamless

Given a bulk transcriptomic (RNA-seq) sample of an Myeloid Leukemia patient calculates immune composition and drug resistance for different small-molecule inhibitors.

Homepage:

https://github.com/eonurk/seAMLess

License:

GPL3 / GPL-3

Recipe:

/r-seamless/meta.yaml

package r-seamless

(downloads) docker_r-seamless

versions:

0.1.0-3,  0.1.0-2,  0.1.0-1,  0.1.0-0

depends bioconductor-biobase:

depends r-base:

>=4.3,<4.4.0a0

depends r-ggplot2:

depends r-ggtern:

depends r-music:

depends r-randomforest:

depends xbioc:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-seamless

and update with::

   mamba update r-seamless

To create a new environment, run:

mamba create --name myenvname r-seamless

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-seamless:<tag>

(see `r-seamless/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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