- recipe r-sigminer
Genomic alterations including single nucleotide substitution, copy number alteration, etc. are the major force for cancer initialization and development. Due to the specificity of molecular lesions caused by genomic alterations, we can generate characteristic alteration spectra, called 'signature' (Wang, Shixiang, et al. (2020) <DOI:10.1101/2020.04.27.20082404> & Alexandrov, Ludmil B., et al. (2020) <DOI:10.1038/s41586-020-1943-3> & Macintyre, Geoff, et al. (2018) <DOI:10.1038/s41588-018-0179-8>). This package helps users to extract, analyze and visualize signatures from genomic alteration records, thus providing new insight into cancer study.
- Homepage:
- License:
MIT / MIT
- Recipe:
- package r-sigminer¶
-
- Versions:
2.1.9-1
,2.1.9-0
,2.1.8-1
,2.1.8-0
,2.1.7-1
,2.1.7-0
,2.1.6-1
,2.1.6-0
,2.1.5-1
,2.1.9-1
,2.1.9-0
,2.1.8-1
,2.1.8-0
,2.1.7-1
,2.1.7-0
,2.1.6-1
,2.1.6-0
,2.1.5-1
,2.1.5-0
,2.1.4-0
,2.1.3-1
,2.1.3-0
,2.1.2-1
,2.1.2-0
,2.1.1-0
,2.1.0-0
,2.0.5-0
,2.0.4-0
,2.0.3-0
,2.0.2-0
,2.0.1-1
,2.0.1-0
,2.0.0-1
,2.0.0-0
,1.2.5-1
,1.2.5-0
,1.2.4-0
,1.2.1-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-sigminer
and update with:
conda update r-sigminer
or use the docker container:
docker pull quay.io/biocontainers/r-sigminer:<tag>
(see r-sigminer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-sigminer/README.html)