recipe r-signac

A framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis. Reference: Stuart and Butler et al. (2019) <doi:10.1016/j.cell.2019.05.031>.

Homepage:

https://github.com/timoast/signac, https://satijalab.org/signac

License:

MIT / MIT

Recipe:

/r-signac/meta.yaml

package r-signac

Versions:

1.9.0-1,  1.9.0-0,  1.8.0-1,  1.8.0-0,  1.7.0-1,  1.7.0-0,  1.6.0-1,  1.6.0-0,  1.5.0-1, 

1.9.0-1,  1.9.0-0,  1.8.0-1,  1.8.0-0,  1.7.0-1,  1.7.0-0,  1.6.0-1,  1.6.0-0,  1.5.0-1,  1.5.0-0,  1.4.0-0,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.2.0-0,  1.1.1-1,  1.1.1-0,  1.1.0-0

Depends:

• bioconductor-biocgenerics

• bioconductor-genomeinfodb >=1.29.3

• bioconductor-genomicranges

• bioconductor-iranges

• bioconductor-rsamtools

• bioconductor-s4vectors

• libgcc-ng >=12

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dplyr >=1.0.0

• r-fastmatch

• r-future

• r-future.apply

• r-ggplot2

• r-irlba

• r-matrix

• r-patchwork

• r-pbapply

• r-rcpp

• r-rcpproll

• r-scales

• r-seuratobject >=4.0.0

• r-stringi

• r-tidyr

• r-tidyselect

• r-vctrs

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-signac

and update with:

conda update r-signac

or use the docker container:

docker pull quay.io/biocontainers/r-signac:<tag>

(see r-signac/tags for valid values for <tag>)

Download stats

Link to this page

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