- recipe r-signac
A framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis. Reference: Stuart and Butler et al. (2019) <doi:10.1016/j.cell.2019.05.031>.
- Homepage:
https://github.com/timoast/signac, https://satijalab.org/signac
- License:
MIT / MIT
- Recipe:
- package r-signac¶
-
- Versions:
1.9.0-1
,1.9.0-0
,1.8.0-1
,1.8.0-0
,1.7.0-1
,1.7.0-0
,1.6.0-1
,1.6.0-0
,1.5.0-1
,1.9.0-1
,1.9.0-0
,1.8.0-1
,1.8.0-0
,1.7.0-1
,1.7.0-0
,1.6.0-1
,1.6.0-0
,1.5.0-1
,1.5.0-0
,1.4.0-0
,1.3.0-0
,1.2.1-1
,1.2.1-0
,1.2.0-0
,1.1.1-1
,1.1.1-0
,1.1.0-0
- Depends:
bioconductor-genomeinfodb
>=1.29.3
libgcc-ng
>=12
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-dplyr
>=1.0.0
r-seuratobject
>=4.0.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-signac
and update with:
conda update r-signac
or use the docker container:
docker pull quay.io/biocontainers/r-signac:<tag>
(see r-signac/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-signac/README.html)