recipe r-sigtree

Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.

Homepage:

https://CRAN.R-project.org/package=SigTree

License:

GPL3 / GPL-3

Recipe:

/r-sigtree/meta.yaml

package r-sigtree

Versions:

1.10.6-11,  1.10.6-10,  1.10.6-9,  1.10.6-8,  1.10.6-7,  1.10.6-6,  1.10.6-5,  1.10.6-4,  1.10.6-3, 

1.10.6-11,  1.10.6-10,  1.10.6-9,  1.10.6-8,  1.10.6-7,  1.10.6-6,  1.10.6-5,  1.10.6-4,  1.10.6-3,  1.10.6-2,  1.10.6-1,  1.10.6-0

Depends:

• bioconductor-phyloseq

• libgcc-ng >=12

• r-ape

• r-base >=4.2,<4.3.0a0

• r-mass

• r-phyext2

• r-phylobase

• r-rcolorbrewer

• r-vegan

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-sigtree

and update with:

conda update r-sigtree

or use the docker container:

docker pull quay.io/biocontainers/r-sigtree:<tag>

(see r-sigtree/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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