recipe r-sigtree

Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.

Homepage:

https://CRAN.R-project.org/package=SigTree

License:

GPL3 / GPL-3

Recipe:

/r-sigtree/meta.yaml

package r-sigtree

(downloads) docker_r-sigtree

versions:
1.10.6-12,  1.10.6-11,  1.10.6-10,  1.10.6-9,  1.10.6-8,  1.10.6-7,  1.10.6-6,  1.10.6-5,  1.10.6-4, 

1.10.6-12,  1.10.6-11,  1.10.6-10,  1.10.6-9,  1.10.6-8,  1.10.6-7,  1.10.6-6,  1.10.6-5,  1.10.6-4,  1.10.6-3,  1.10.6-2,  1.10.6-1,  1.10.6-0

depends bioconductor-phyloseq:

depends libgcc-ng:

>=12

depends r-ape:

depends r-base:

>=4.3,<4.4.0a0

depends r-mass:

depends r-phyext2:

depends r-phylobase:

depends r-rcolorbrewer:

depends r-vegan:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-sigtree

and update with::

   mamba update r-sigtree

To create a new environment, run:

mamba create --name myenvname r-sigtree

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-sigtree:<tag>

(see `r-sigtree/tags`_ for valid values for ``<tag>``)

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Link to this page

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