recipe r-sleuth

Sleuth is an R library for analysis of RNA-Seq experiments for which transcript abundances have been quantified with kallisto.

Homepage

http://pachterlab.github.io/sleuth

License

GPLv3

Recipe

/r-sleuth/meta.yaml

package r-sleuth

(downloads) docker_r-sleuth

Versions

0.30.0-1, 0.30.0-0, 0.29.0-0, 0.28.0-0, 0.0.1-0

Depends bioconductor-rhdf5

Depends r-aggregation

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-data.table

Depends r-dplyr

Depends r-ggplot2

Depends r-lazyeval

Depends r-matrixstats

Depends r-pheatmap

Depends r-reshape2

Depends r-shiny

Depends r-tidyr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-sleuth

and update with:

conda update r-sleuth

or use the docker container:

docker pull quay.io/biocontainers/r-sleuth:<tag>

(see r-sleuth/tags for valid values for <tag>)