recipe radiant

Annotate proteomes with protein domains

Homepage:

https://domainworld.uni-muenster.de/data/radiant-db/index.html

License:

GPL-3.0-or-later

Recipe:

/radiant/meta.yaml

This program rapidly annotates protein sequences with Pfam domains

package radiant

(downloads) docker_radiant

versions:

1.1.5-0

depends boost-cpp:

>=1.84.0,<1.84.1.0a0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc-ng:

>=12

depends libsqlite:

>=3.45.3,<4.0a0

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends openmp:

depends sqlite:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install radiant

and update with::

   mamba update radiant

To create a new environment, run:

mamba create --name myenvname radiant

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/radiant:<tag>

(see `radiant/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/radiant/README.html)