recipe rapid/0.8

Read Alignment, Analysis, and Differential Pipeline (RAPID) is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data.

Homepage

https://github.com/SchulzLab/RAPID

License

GPL2

Recipe

/rapid/0.8/meta.yaml

package rapid

(downloads) docker_rapid

Versions

1.0-0, 0.8-3, 0.8-2, 0.8-1, 0.8-0, 0.7-0, 0.6-0, 0.5-0, 0.4-1, 0.4-0, 0.3-0, 0.2-3, 0.2-2, 0.2-1, 0.2-0, 0.1-0

Depends bedtools

2.23.0

Depends bioconductor-deseq2

Depends bowtie2

2.3.0

Depends pandoc

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-gplots

Depends r-knitr

Depends r-rcolorbrewer

Depends r-reshape2

Depends r-rmarkdown

Depends r-scales

Depends r-viridis

Depends samtools

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rapid

and update with:

conda update rapid

or use the docker container:

docker pull quay.io/biocontainers/rapid:<tag>

(see rapid/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rapid/README.html)