recipe rapid/0.8

Read Alignment, Analysis, and Differential Pipeline (RAPID) is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data.

Homepage

https://github.com/SchulzLab/RAPID

License

GPL2

Recipe

/rapid/0.8/meta.yaml

package rapid

Versions

1.0-0,  0.8-3,  0.8-2,  0.8-1,  0.8-0,  0.7-0,  0.6-0,  0.5-0,  0.4-1, 

1.0-0,  0.8-3,  0.8-2,  0.8-1,  0.8-0,  0.7-0,  0.6-0,  0.5-0,  0.4-1,  0.4-0,  0.3-0,  0.2-3,  0.2-2,  0.2-1,  0.2-0,  0.1-0

Depends

• bedtools 2.23.0

• bioconductor-deseq2

• bowtie2 2.3.0

• pandoc

• r-base >=3.5.1,<3.5.2.0a0

• r-ggplot2

• r-gplots

• r-knitr

• r-rcolorbrewer

• r-reshape2

• r-rmarkdown

• r-scales

• r-viridis

• samtools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rapid

and update with:

conda update rapid

or use the docker container:

docker pull quay.io/biocontainers/rapid:<tag>

(see rapid/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rapid/README.html)