recipe rapidshapes

RapidShapes computes a thermodynamic matcher (TDM), using a runtime heuristic for probabilistic shape analysis.

Homepage:

https://bibiserv.cebitec.uni-bielefeld.de/rapidshapes

License:

GPL-3.0-or-later

Recipe:

/rapidshapes/meta.yaml

Links:

doi: 10.1093/bioinformatics/btq014, doi: 10.1093/bioinformatics/btu649

package rapidshapes

(downloads) docker_rapidshapes

versions:

2.1.0-1,  2.1.0-0

depends bellmans-gapc:

>=2024.01.12

depends bellmans-gapc:

>=2024.1.12

depends gxx_linux-64:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rapidshapes

and update with::

   mamba update rapidshapes

To create a new environment, run:

mamba create --name myenvname rapidshapes

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rapidshapes:<tag>

(see `rapidshapes/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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