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recipe
ratt
Rapid Annotation Transfer Tool
- Homepage
- License
GPL3
- Recipe
RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between strains and even different species, like Plasmodium chabaudi onto P. berghei, between different Leishmania species or Salmonella enterica onto other Salmonella serotypes. RATT is able to transfer any entries present on a reference sequence, such as the systematic id or an annotator's notes; such information would be lost in a de novo annotation.
-
package
ratt
¶ -
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install ratt
and update with:
conda update ratt
or use the docker container:
docker pull quay.io/biocontainers/ratt:<tag>
(see ratt/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/ratt/README.html)