recipe ratt

Rapid Annotation Transfer Tool

Homepage

http://ratt.sourceforge.net

License

GPL3

Recipe

/ratt/meta.yaml

RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between strains and even different species, like Plasmodium chabaudi onto P. berghei, between different Leishmania species or Salmonella enterica onto other Salmonella serotypes. RATT is able to transfer any entries present on a reference sequence, such as the systematic id or an annotator's notes; such information would be lost in a de novo annotation.

package ratt

(downloads) docker_ratt

Versions

1.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ratt

and update with:

conda update ratt

or use the docker container:

docker pull quay.io/biocontainers/ratt:<tag>

(see ratt/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ratt/README.html)