recipe rawtools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files.

Homepage:

https://github.com/kevinkovalchik/RawTools

License:

Apache License, Version 2.0

Recipe:

/rawtools/meta.yaml

package rawtools

(downloads) docker_rawtools

versions:

2.0.4-0,  2.0.3-1,  2.0.3-0,  2.0.2-0,  1.4.2-0,  1.4.1-0

depends mono:

>=5.0.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rawtools

and update with::

   mamba update rawtools

To create a new environment, run:

mamba create --name myenvname rawtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rawtools:<tag>

(see `rawtools/tags`_ for valid values for ``<tag>``)

Notes

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files. RawTools is written in C# and uses the Thermo RawFileReader library. RawTools is fully compatible with Windows, Linux, and MacOS operating systems. RawTools is the replacement for the previously described RawQuant Python package.

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Link to this page

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