recipe rdp_classifier

Naive Bayesian classifier that can rapidly and accurately provide taxonomic assignments from domain to genus

Homepage:

https://sourceforge.net/projects/rdp-classifier/

License:

GPL-2.0-only

Recipe:

/rdp_classifier/meta.yaml

package rdp_classifier

(downloads) docker_rdp_classifier

versions:

2.14-0,  2.13-1,  2.13-0,  2.2-2,  2.2-1,  2.2-0

depends openjdk:

>=11

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rdp_classifier

and update with::

   mamba update rdp_classifier

To create a new environment, run:

mamba create --name myenvname rdp_classifier

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rdp_classifier:<tag>

(see `rdp_classifier/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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