recipe readfq

A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version

Homepage:

https://github.com/billzt/readfq

License:

MIT / MIT

Recipe:

/readfq/meta.yaml

package readfq

(downloads) docker_readfq

versions:

2015.08.30-5,  2015.08.30-4,  2015.08.30-3,  2015.08.30-2,  2015.08.30-1,  2015.08.30-0

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install readfq

and update with::

   mamba update readfq

To create a new environment, run:

mamba create --name myenvname readfq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/readfq:<tag>

(see `readfq/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/readfq/README.html)