recipe reads2graph

reads2graph is an efficient tool for constructing edit-distance-based read graph from short-read sequencing data.

Homepage:

https://github.com/Jappy0/reads2graph

License:

BSD / BSD-3-Clause

Recipe:

/reads2graph/meta.yaml

Links:

biotools: reads2graph

package reads2graph

versions:

1.0.0-0

depends boost:

>=1.82.0,<1.82.1.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends openmp:

8.0.1

depends seqan3:

3.3.0

depends seqan3:

>=3.3.0,<4.0a0

depends sharg:

1.1.1

depends sharg:

>=1.1.1,<2.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install reads2graph

and update with::

   mamba update reads2graph

To create a new environment, run:

mamba create --name myenvname reads2graph

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/reads2graph:<tag>

(see `reads2graph/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/reads2graph/README.html)