recipe recentrifuge

Robust comparative analysis and contamination removal for metagenomics

Homepage:

https://github.com/khyox/recentrifuge

Documentation:

https://github.com/khyox/recentrifuge/wiki

License:

AGPL / AGPL-3.0-or-later

Recipe:

/recentrifuge/meta.yaml

package recentrifuge

(downloads) docker_recentrifuge

versions:
1.15.0-0,  1.14.1-0,  1.14.0-0,  1.13.2-0,  1.13.1-0,  1.13.0-0,  1.12.2-0,  1.12.1-0,  1.10.0-0, 

1.15.0-0,  1.14.1-0,  1.14.0-0,  1.13.2-0,  1.13.1-0,  1.13.0-0,  1.12.2-0,  1.12.1-0,  1.10.0-0,  1.9.1-0,  1.9.0-0,  1.8.1-0,  1.8.0-0,  1.7.0-0,  1.6.3-0,  1.6.2-0,  1.6.1-0,  1.6.0-0,  1.5.2-0,  1.5.1-0,  1.4.2-0,  1.4.1-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.1-0,  1.2.0-0,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  0.29.0-0,  0.28.14-0,  0.28.13-0

depends biopython:

1.79.*

depends matplotlib-base:

>=3.3.4

depends numpy:

>=1.19.5

depends openpyxl:

>=3.1

depends pandas:

<2.0.0

depends python:

>=3.6

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install recentrifuge

and update with::

   mamba update recentrifuge

To create a new environment, run:

mamba create --name myenvname recentrifuge

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/recentrifuge:<tag>

(see `recentrifuge/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/recentrifuge/README.html)