recipe recognizer

A tool for domain based annotation with the COG database

Homepage

https://github.com/iquasere/reCOGnizer

Documentation

https://github.com/iquasere/reCOGnizer/blob/master/README.md

License

BSD / BSD-3-Clause

Recipe

/recognizer/meta.yaml

reCOGnizer performs domain based annotation with RPS-BLAST, using Hidden Markov Models (HMM) from COG database. It rebuilds COG database for multithreaded annotation, organizes information regarding COG IDs and respective categories, obtains EC numbers using resources from the eggNOG database and organizes all this information into TSV and EXCEL files for easy handling by users or pipelines. It also produces a Krona plot representing the quantification of COG functions identified.

package recognizer

(downloads) docker_recognizer

Versions
1.4.7-01.4.6-01.4.5-01.4.4-11.4.4-01.4.3-01.4.2-01.4.1-01.4.0-0

1.4.7-01.4.6-01.4.5-01.4.4-11.4.4-01.4.3-01.4.2-01.4.1-01.4.0-01.3.3-01.3.2-01.3.1-01.3.0-01.2.5-01.2.4-01.2.3-01.2.2-01.2.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install recognizer

and update with:

conda update recognizer

or use the docker container:

docker pull quay.io/biocontainers/recognizer:<tag>

(see recognizer/tags for valid values for <tag>)