recipe recognizer

A tool for domain based annotation with the COG database

Homepage:

https://github.com/iquasere/reCOGnizer

Documentation:

https://github.com/iquasere/reCOGnizer/blob/master/README.md

License:

BSD / BSD-3-Clause

Recipe:

/recognizer/meta.yaml

reCOGnizer performs domain based annotation with RPS-BLAST, using Hidden Markov Models (HMM) from COG database. It rebuilds COG database for multithreaded annotation, organizes information regarding COG IDs and respective categories, obtains EC numbers using resources from the eggNOG database and organizes all this information into TSV and EXCEL files for easy handling by users or pipelines. It also produces a Krona plot representing the quantification of COG functions identified.

package recognizer

(downloads) docker_recognizer

Versions:
1.8.3-01.8.2-01.8.1-01.8.0-01.7.2-01.7.1-01.7.0-01.6.5-01.6.4-0

1.8.3-01.8.2-01.8.1-01.8.0-01.7.2-01.7.1-01.7.0-01.6.5-01.6.4-01.6.3-01.6.2-01.6.1-01.6.0-01.5.3-01.5.2-01.5.1-01.5.0-01.4.10-01.4.9-01.4.8-01.4.7-01.4.6-01.4.5-01.4.4-11.4.4-01.4.3-01.4.2-01.4.1-01.4.0-01.3.3-01.3.2-01.3.1-01.3.0-01.2.5-01.2.4-01.2.3-01.2.2-01.2.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install recognizer

and update with:

conda update recognizer

or use the docker container:

docker pull quay.io/biocontainers/recognizer:<tag>

(see recognizer/tags for valid values for <tag>)

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