recipe recycler

Recycler is a tool designed for extracting circular sequences from de novo assembly graphs

Homepage:

https://github.com/Shamir-Lab/Recycler

License:

BSD / BSD-3-Clause

Recipe:

/recycler/meta.yaml

package recycler

(downloads) docker_recycler

versions:

0.7-3,  0.7-2,  0.7-0,  0.6.2-0,  0.6-0,  0.6p1-0

depends networkx:

depends nose:

depends numpy:

depends pysam:

depends python:

<3

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install recycler

and update with::

   mamba update recycler

To create a new environment, run:

mamba create --name myenvname recycler

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/recycler:<tag>

(see `recycler/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/recycler/README.html)