- recipe redundans
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
- Homepage:
- License:
GPL3 / GPL-3.0-or-later
- Recipe:
- Links:
biotools: redundans
- package redundans¶
- versions:
2.01-0- depends bwa:
>=0.7.12- depends gfastats:
>=1.3.6- depends libgcc-ng:
>=12- depends libstdcxx-ng:
>=12- depends libzlib:
>=1.2.13,<1.3.0a0- depends matplotlib-base:
>=3.7.3- depends meryl:
1.3.*- depends miniasm:
>=0.3- depends minimap2:
>=2.24- depends numpy:
>=1.24.0- depends perl:
>=5.32.1,<5.33.0a0 *_perl5- depends python:
>=3.10,<3.11.0a0- depends python_abi:
3.10.* *_cp310- depends r-argparse:
>=2.0.1- depends r-base:
>=4- depends r-ggplot2:
>=3.3.2- depends r-scales:
>=1.1.1- depends snap-aligner:
>=2.0.3- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install redundans and update with:: mamba update redundans
To create a new environment, run:
mamba create --name myenvname redundans
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/redundans:<tag> (see `redundans/tags`_ for valid values for ``<tag>``)
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Link to this page¶
Render an 
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[](http://bioconda.github.io/recipes/redundans/README.html)
