recipe refgenconf

A standardized configuration object for reference genome assemblies

Homepage:

https://refgenie.databio.org

License:

BSD / BSD-2-Clause

Recipe:

/refgenconf/meta.yaml

package refgenconf

versions:

0.12.2-0,  0.12.0-0,  0.11.1-0,  0.11.0-0,  0.10.0-0,  0.9.3-0,  0.9.2-0,  0.9.1-0,  0.9.0-1, 

0.12.2-0,  0.12.0-0,  0.11.1-0,  0.11.0-0,  0.10.0-0,  0.9.3-0,  0.9.2-0,  0.9.1-0,  0.9.0-1,  0.9.0-0,  0.7.0-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.4-0

depends future:

depends jsonschema:

>=3.0.1

depends python:

>=3.6

depends pyyaml:

depends requests:

depends rich:

>=9.0.1

depends yacman:

>=0.8.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install refgenconf

and update with::

   mamba update refgenconf

To create a new environment, run:

mamba create --name myenvname refgenconf

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/refgenconf:<tag>

(see `refgenconf/tags`_ for valid values for ``<tag>``)

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