recipe refinem

A toolbox for improving population genomes.

Homepage

http://pypi.python.org/pypi/refinem/

Documentation

https://github.com/dparks1134/RefineM/blob/master/README.md

Developer docs

https://github.com/dparks1134/RefineM

License

GPL3 / GPL3

Recipe

/refinem/meta.yaml

package refinem

(downloads) docker_refinem

Versions

0.0.24-3, 0.0.24-2

Depends biolib

>=0.0.45

Depends blast

>=2.6.0

Depends dendropy

Depends diamond

>=0.9.9

Depends jinja2

>=2.7.3

Depends krona

>=2.7

Depends matplotlib

>=1.4.0

Depends mpld3

>=0.2

Depends numpy

>=1.9.0

Depends prodigal

>=2.6.3

Depends pysam

Depends python

<3

Depends scipy

>=1.0.0

Depends weightedstats

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install refinem

and update with:

conda update refinem

or use the docker container:

docker pull quay.io/biocontainers/refinem:<tag>

(see refinem/tags for valid values for <tag>)