Package Recipe 'refinem'

recipe refinem

A toolbox for improving population genomes.

Homepage:: http://pypi.python.org/pypi/refinem/
Documentation:: https://github.com/dparks1134/RefineM/blob/master/README.md
Developer docs:: https://github.com/dparks1134/RefineM
License:: GPL3 / GPL3
Recipe:: /refinem/meta.yaml

package refinem¶

Versions:

0.1.2-0, 0.1.1-1, 0.1.1-0, 0.1.0-1, 0.1.0-0, 0.0.25-0, 0.0.24-3, 0.0.24-2

Depends:

biolib >=0.0.45
blast >=2.6.0
dendropy
diamond >=0.9.9
jinja2 >=2.7.3
krona >=2.7
matplotlib-base >=1.4.0
mpld3 >=0.2
numpy >=1.9.0
prodigal >=2.6.3
pysam
python
scipy >=1.0.0
weightedstats

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install refinem

and update with:

conda update refinem

or use the docker container:

docker pull quay.io/biocontainers/refinem:<tag>

(see refinem/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/refinem/README.html)