recipe reframed

metabolic modeling package

Homepage:

https://github.com/cdanielmachado/reframed

License:

Apache-2.0

Recipe:

/reframed/meta.yaml

Links:

biotools: reframed, doi: 10.5281/zenodo.7955995

package reframed

(downloads) docker_reframed

versions:

1.5.1-1,  1.5.1-0,  1.5.0-0,  1.4.0-0

depends numpy:

depends pyscipopt:

depends python:

>=3.6

depends python-libsbml:

depends scip:

depends scipy:

depends sympy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install reframed

and update with::

   mamba update reframed

To create a new environment, run:

mamba create --name myenvname reframed

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/reframed:<tag>

(see `reframed/tags`_ for valid values for ``<tag>``)

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