recipe reneo

Reneo: Unraveling Viral Genomes from Metagenomes

Homepage:

https://github.com/Vini2/phables

Documentation:

https://github.com/Vini2/reneo

Developer docs:

https://github.com/Vini2/reneo

License:

MIT / MIT

Recipe:

/reneo/meta.yaml

Reneo recovers high-quality genomes from viral communities (including both prokaryotic and eukaryotic viruses) found within metagenomes.

package reneo

versions:

0.5.0-0,  0.4.0-0,  0.3.1-0,  0.3.0-0,  0.2.0-0

depends click:

>=8.1.3

depends jinja2:

>=3.0.2

depends mamba:

<1.4.2

depends metasnek:

>=0.0.5

depends python:

<3.11

depends pyyaml:

>=6.0

depends snakemake-minimal:

>=7.14.0

depends snaketool-utils:

>=0.0.3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install reneo

and update with::

   mamba update reneo

To create a new environment, run:

mamba create --name myenvname reneo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/reneo:<tag>

(see `reneo/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/reneo/README.html)