- recipe repeatmodeler
RepeatModeler is a de-novo repeat family identification and modeling package.
- Homepage:
- Developer docs:
- License:
Open Software License v2.1
- Recipe:
- Links:
biotools: RepeatModeler
- package repeatmodeler¶
-
- Versions:
2.0.3-0
,2.0.2a-1
,2.0.2a-0
,2.0.1-0
,1.0.11-3
,1.0.11-2
,1.0.11-1
,1.0.11-0
,1.0.8-1
,2.0.3-0
,2.0.2a-1
,2.0.2a-0
,2.0.1-0
,1.0.11-3
,1.0.11-2
,1.0.11-1
,1.0.11-0
,1.0.8-1
,1.0.8-0
- Depends:
cd-hit
>=4.8.1
genometools-genometools
>=1.6
ltr_retriever
>=2.9
mafft
>=7.471
perl
>=5.32.1,<5.33.0a0 *_perl5
recon
>=1.08
repeatscout
>=1.0.6
rmblast
>=2.11.0
trf
>=4.09
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install repeatmodeler
and update with:
conda update repeatmodeler
or use the docker container:
docker pull quay.io/biocontainers/repeatmodeler:<tag>
(see repeatmodeler/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/repeatmodeler/README.html)