recipe repeatmodeler

RepeatModeler is a de-novo repeat family identification and modeling package.

Homepage:

http://www.repeatmasker.org/RepeatModeler/

Developer docs:

https://github.com/Dfam-consortium/RepeatModeler

License:

Open Software License v2.1

Recipe:

/repeatmodeler/meta.yaml

Links:

biotools: RepeatModeler

package repeatmodeler

Versions:

2.0.3-0,  2.0.2a-1,  2.0.2a-0,  2.0.1-0,  1.0.11-3,  1.0.11-2,  1.0.11-1,  1.0.11-0,  1.0.8-1, 

2.0.3-0,  2.0.2a-1,  2.0.2a-0,  2.0.1-0,  1.0.11-3,  1.0.11-2,  1.0.11-1,  1.0.11-0,  1.0.8-1,  1.0.8-0

Depends:

• cd-hit >=4.8.1

• genometools-genometools >=1.6

• ltr_retriever >=2.9

• mafft >=7.471

• ninja-nj

• perl >=5.32.1,<5.33.0a0 *_perl5

• perl-devel-size

• perl-file-which

• perl-libwww-perl

• perl-uri

• recon >=1.08

• repeatmasker

• repeatscout >=1.0.6

• rmblast >=2.11.0

• trf >=4.09

• ucsc-fatotwobit

• ucsc-twobitinfo

• ucsc-twobittofa

Required By:

• edta

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install repeatmodeler

and update with:

conda update repeatmodeler

or use the docker container:

docker pull quay.io/biocontainers/repeatmodeler:<tag>

(see repeatmodeler/tags for valid values for <tag>)

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