recipe resistify

A resistance gene annotation tool

Homepage:

https://github.com/swiftseal/resistify

Documentation:

https://github.com/SwiftSeal/resistify/blob/main/README.md

Developer docs:

https://github.com/SwiftSeal/resistify

License:

GPL-3.0

Recipe:

/resistify/meta.yaml

Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightweight and easy to use.

package resistify

versions:

1.0.0-0,  0.70.0-0,  0.6.3-0,  0.6.2-0,  0.6.1-2,  0.6.1-0,  0.6.0-1,  0.6.0-0,  0.5.2-0, 

1.0.0-0,  0.70.0-0,  0.6.3-0,  0.6.2-0,  0.6.1-2,  0.6.1-0,  0.6.0-1,  0.6.0-0,  0.5.2-0,  0.5.1-1,  0.5.1-0,  0.5.0-0,  0.4.0-0,  0.3.0-0,  0.2.2-0,  0.2.1-0,  0.1.1-0,  0.1.0-0

depends biopython:

depends fair-esm:

depends hmmer:

depends numpy:

depends python:

>=3.9,<3.13

depends pytorch:

depends rich:

depends rich-argparse:

depends scikit-learn:

>=0.24.2

depends sentencepiece:

depends transformers:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install resistify

and update with::

   mamba update resistify

To create a new environment, run:

mamba create --name myenvname resistify

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/resistify:<tag>

(see `resistify/tags`_ for valid values for ``<tag>``)

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