recipe revtrans

revtrans - performs a reverse translation of a peptide alignment.

Homepage:

http://www.cbs.dtu.dk/services/RevTrans-2.0/web/download.php

License:

GPL / GPLv2

Recipe:

/revtrans/meta.yaml

Links:

biotools: revtrans

package revtrans

versions:

1.4-1,  1.4-0

depends python:

<3

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install revtrans

and update with::

   mamba update revtrans

To create a new environment, run:

mamba create --name myenvname revtrans

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/revtrans:<tag>

(see `revtrans/tags`_ for valid values for ``<tag>``)

Notes

This package includes a modified version of the program named 'revtrans_jarmo.py' that works with peptide fragments instead of full length sequences.

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