recipe rfmix

RFMix implements a fast discriminative approach to modeling ancestry along an admixed chromosome given observed haplotype sequences of known or inferred ancestry.

Homepage:

https://github.com/slowkoni/rfmix

License:

Free for Academic Use

Recipe:

/rfmix/meta.yaml

Links:

biotools: RFMix, doi: 10.1016/j.ajhg.2013.06.020

package rfmix

(downloads) docker_rfmix

versions:

2.03.r0.9505bfa-5,  2.03.r0.9505bfa-4,  2.03.r0.9505bfa-3,  2.03.r0.9505bfa-2,  2.03.r0.9505bfa-1,  2.03.r0.9505bfa-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends pthread-stubs:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rfmix

and update with::

   mamba update rfmix

To create a new environment, run:

mamba create --name myenvname rfmix

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rfmix:<tag>

(see `rfmix/tags`_ for valid values for ``<tag>``)

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