recipe rfplasmid

RFPlasmid predicts plasmid contigs from assemblies using single copy marker genes, plasmid genes, and kmers.

Homepage:

https://github.com/aldertzomer/RFPlasmid

License:

GPL / GNU General Public License v3 (GPL-3.0)

Recipe:

/rfplasmid/meta.yaml

package rfplasmid

Versions:

0.0.18-0,  0.0.17-0,  0.0.16-0,  0.0.15-0

Depends:

• biopython

• checkm-genome

• diamond

• kmer-jellyfish

• pandas

• pysam >=0.15.3

• python >=3.6

• r-randomforest

• wget

• zlib >=1.2.11,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rfplasmid

and update with:

conda update rfplasmid

or use the docker container:

docker pull quay.io/biocontainers/rfplasmid:<tag>

(see rfplasmid/tags for valid values for <tag>)

Download stats

Link to this page

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