recipe rgi

This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website

Links:doi: 10.1093/nar/gkw1004
package rgi

(downloads) docker_rgi


4.2.2-1, 4.2.2-0, 4.0.3-3, 4.0.3-2, 4.0.3-1, 4.0.3-0, 3.2.1-4, 3.2.1-3, 3.2.1-2, 3.2.1-1, 3.2.0-3, 3.2.0-2, 3.2.0-1, 3.1.2-3, 3.1.2-2, 3.1.2-1, 3.1.1-2, 3.1.1-1, 3.1.0-1, 3.1.0-0

Required By:


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rgi

and update with:

conda update rgi

or use the docker container:

docker pull<tag>

(see rgi/tags for valid values for <tag>)