recipe ribocode

A package for detecting the actively translated ORFs using ribosome-profiling data

Homepage:

https://github.com/xryanglab/RiboCode

License:

MIT / MIT

Recipe:

/ribocode/meta.yaml

package ribocode

Versions:

1.2.15-0,  1.2.14-0,  1.2.13-0,  1.2.12-0,  1.2.11-1,  1.2.11-0,  1.2.10-2,  1.2.10-1,  1.2.10-0, 

1.2.15-0,  1.2.14-0,  1.2.13-0,  1.2.12-0,  1.2.11-1,  1.2.11-0,  1.2.10-2,  1.2.10-1,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0

Depends:

• biopython

• future

• h5py

• htseq

• matplotlib-base

• minepy

• numpy

• pyfasta

• pysam >0.8.4

• python

• scipy

• statsmodels

Required By:

• ribominer

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ribocode

and update with:

conda update ribocode

or use the docker container:

docker pull quay.io/biocontainers/ribocode:<tag>

(see ribocode/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ribocode/README.html)