recipe ribocode

A package for detecting the actively translated ORFs using ribosome-profiling data

Homepage:

https://github.com/xryanglab/RiboCode

License:

MIT / MIT

Recipe:

/ribocode/meta.yaml

package ribocode

versions:

1.2.15-0,  1.2.14-0,  1.2.13-0,  1.2.12-0,  1.2.11-1,  1.2.11-0,  1.2.10-2,  1.2.10-1,  1.2.10-0, 

1.2.15-0,  1.2.14-0,  1.2.13-0,  1.2.12-0,  1.2.11-1,  1.2.11-0,  1.2.10-2,  1.2.10-1,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0

depends biopython:

depends future:

depends h5py:

depends htseq:

depends matplotlib-base:

depends minepy:

depends numpy:

depends pyfasta:

depends pysam:

>0.8.4

depends python:

depends scipy:

depends statsmodels:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ribocode

and update with::

   mamba update ribocode

To create a new environment, run:

mamba create --name myenvname ribocode

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ribocode:<tag>

(see `ribocode/tags`_ for valid values for ``<tag>``)

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