recipe ribodetector

Accurate and rapid RiboRNA sequences Detector based on deep learning

Homepage:

https://github.com/hzi-bifo/RiboDetector

License:

GPL3 / GPL-3.0-or-later

Recipe:

/ribodetector/meta.yaml

Links:

biotools: ribodetector

package ribodetector

versions:

0.3.1-0,  0.3.0-0,  0.2.9-0,  0.2.8-0,  0.2.7-0,  0.2.6-0,  0.2.4-0,  0.2.3-0

depends biopython:

depends numpy:

depends onnxruntime:

depends pandas:

depends python:

>=3.8,<=3.10

depends pytorch:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ribodetector

and update with::

   mamba update ribodetector

To create a new environment, run:

mamba create --name myenvname ribodetector

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ribodetector:<tag>

(see `ribodetector/tags`_ for valid values for ``<tag>``)

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Link to this page

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