recipe ribodiff

RiboDiff is a statistical tool that detects the protein translational efficiency change from Ribo-Seq (ribosome footprinting) and RNA-Seq data.

Homepage:

http://public.bmi.inf.ethz.ch/user/zhongy/RiboDiff/index.html

License:

GPL 3

Recipe:

/ribodiff/meta.yaml

package ribodiff

(downloads) docker_ribodiff

versions:

0.2.2-2,  0.2.2-1,  0.2.2-0

depends matplotlib:

>=1.3.0

depends numpy:

>=1.8.0

depends python:

<3

depends scipy:

>=0.13.3

depends statsmodels:

>=0.5.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ribodiff

and update with::

   mamba update ribodiff

To create a new environment, run:

mamba create --name myenvname ribodiff

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ribodiff:<tag>

(see `ribodiff/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ribodiff/README.html)