recipe ribominer

A python toolset for mining multi-dimensional features of the translatome with ribosome profiling data

Homepage:

https://github.com/xryanglab/RiboMiner

License:

GPL3 / GPLv3.0

Recipe:

/ribominer/meta.yaml

package ribominer

Versions:

0.2.3.2-0,  0.2.3.1-0

Depends:

• biopython >=1.70

• htseq

• matplotlib-base

• numpy >=1.16.4

• pandas >=0.24.2

• pysam >=0.15.2

• pysamstats

• python

• ribocode >=1.2.10

• scipy >=1.1.0

• seaborn >=0.8.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ribominer

and update with:

conda update ribominer

or use the docker container:

docker pull quay.io/biocontainers/ribominer:<tag>

(see ribominer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ribominer/README.html)