recipe ribominer

A python toolset for mining multi-dimensional features of the translatome with ribosome profiling data

Homepage

https://github.com/xryanglab/RiboMiner

License

GPL3 / GPLv3.0

Recipe

/ribominer/meta.yaml

package ribominer

Versions

0.2.3.1-0

Depends

• biopython >=1.70

• htseq

• matplotlib-base >=2.1.0

• numpy >=1.16.4

• pandas >=0.24.2

• pysam >=0.15.2

• pysamstats

• python

• ribocode >=1.2.10

• scipy >=1.1.0

• seaborn >=0.8.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ribominer

and update with:

conda update ribominer

or use the docker container:

docker pull quay.io/biocontainers/ribominer:<tag>

(see ribominer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ribominer/README.html)