Package Recipe 'riboseed'

recipe riboseed¶

riboSeed: assemble across rDNA regions

Homepage: https://github.com/nickp60/riboSeed
License: MIT / MIT License
Recipe: /riboseed/meta.yaml

Genome assembly polisher to bridge rDNA gaps

package riboseed¶

Versions

0.4.73-1, 0.4.73-0, 0.4.71-0, 0.4.70-2, 0.4.68-2, 0.4.67-2, 0.4.65-1, 0.4.47-1, 0.4.47-0, 0.4.16-0

Depends

barrnap 0.7
bcftools 1.5
biopython 1.68
blast
bwa 0.7.8
coverage 4.4.1
emboss
jenkspy 0.1.4
mafft
matplotlib 1.5.3
networkx 2.1
nose 1.3.7
pandas 0.20.1
prank
pyaml 17.8.0
pysam 0.11.2.2
python >=3.5,<3.6.0a0
samtools 1.4.1
spades 3.9.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install riboseed

and update with:

conda update riboseed

or use the docker container:

docker pull quay.io/biocontainers/riboseed:<tag>

(see riboseed/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/riboseed/README.html)