recipe riboseed

riboSeed: assemble across rDNA regions

Homepage:https://github.com/nickp60/riboSeed License:MIT / MIT License Recipe:/riboseed/meta.yaml

Genome assembly polisher to bridge rDNA gaps

package riboseed

Versions:

0.4.73-1, 0.4.73-0, 0.4.71-0, 0.4.70-2, 0.4.68-2, 0.4.67-2, 0.4.65-1, 0.4.47-1, 0.4.47-0, 0.4.16-0

Depends:

• barrnap 0.7
• bcftools 1.5
• biopython 1.68
• blast
• bwa 0.7.8
• coverage 4.4.1
• emboss
• jenkspy 0.1.4
• mafft
• matplotlib 1.5.3
• networkx 2.1
• nose 1.3.7
• pandas 0.20.1
• prank
• pyaml 17.8.0
• pysam 0.11.2.2
• python >=3.5,<3.6.0a0
• samtools 1.4.1
• spades 3.9.0

Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install riboseed

and update with:

conda update riboseed

or use the docker container:

docker pull quay.io/biocontainers/riboseed:<tag>

(see riboseed/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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