recipe riboseed

riboSeed: assemble across rDNA regions

Homepage

https://github.com/nickp60/riboSeed

License

MIT / MIT License

Recipe

/riboseed/meta.yaml

Genome assembly polisher to bridge rDNA gaps

package riboseed

Versions

0.4.90-0,  0.4.89-0,  0.4.88-0,  0.4.87-0,  0.4.86-0,  0.4.73-1,  0.4.73-0,  0.4.71-0,  0.4.70-2, 

0.4.90-0,  0.4.89-0,  0.4.88-0,  0.4.87-0,  0.4.86-0,  0.4.73-1,  0.4.73-0,  0.4.71-0,  0.4.70-2,  0.4.68-2,  0.4.67-2,  0.4.65-1,  0.4.47-1,  0.4.47-0,  0.4.16-0

Depends

• barrnap

• bcbiogff

• bcftools

• biopython

• blast

• bwa

• coverage

• jenkspy

• mafft

• matplotlib

• networkx

• numpy

• pandas

• prank

• pyaml

• pysam

• python 3.5.*

• quast >=4.6.3

• samtools

• skesa

• spades 3.9.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install riboseed

and update with:

conda update riboseed

or use the docker container:

docker pull quay.io/biocontainers/riboseed:<tag>

(see riboseed/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/riboseed/README.html)