- recipe riboseed
riboSeed: assemble across rDNA regions
- Homepage:
- License:
MIT / MIT License
- Recipe:
Genome assembly polisher to bridge rDNA gaps
- package riboseed¶
- versions:
0.4.90-0,0.4.89-0,0.4.88-0,0.4.87-0,0.4.86-0,0.4.73-1,0.4.73-0,0.4.71-0,0.4.70-2,0.4.90-0,0.4.89-0,0.4.88-0,0.4.87-0,0.4.86-0,0.4.73-1,0.4.73-0,0.4.71-0,0.4.70-2,0.4.68-2,0.4.67-2,0.4.65-1,0.4.47-1,0.4.47-0,0.4.16-0- depends barrnap:
- depends bcbiogff:
- depends bcftools:
- depends biopython:
- depends blast:
- depends bwa:
- depends coverage:
- depends jenkspy:
- depends mafft:
- depends matplotlib:
- depends networkx:
- depends numpy:
- depends pandas:
- depends prank:
- depends pyaml:
- depends pysam:
- depends python:
3.5.*- depends quast:
>=4.6.3- depends samtools:
- depends skesa:
- depends spades:
3.9.1- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install riboseed and update with:: mamba update riboseed
To create a new environment, run:
mamba create --name myenvname riboseed
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/riboseed:<tag> (see `riboseed/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/riboseed/README.html)
