recipe riboseq-rust

Ribo-seq Unit Step Transformation. Tools to characterise the determinants of ribosome profiling read density across mRNA. May be used to examine relative decoding rates and and for quality assessment

Homepage:

https://lapti.ucc.ie/rust/

License:

GPL-3.0

Recipe:

/riboseq-rust/meta.yaml

package riboseq-rust

versions:

1.2-1,  1.2-0

depends argparse:

depends matplotlib:

depends numpy:

depends pysam:

depends python:

<3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install riboseq-rust

and update with::

   mamba update riboseq-rust

To create a new environment, run:

mamba create --name myenvname riboseq-rust

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/riboseq-rust:<tag>

(see `riboseq-rust/tags`_ for valid values for ``<tag>``)

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Link to this page

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