recipe ribotaper

RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet periodicity of ribosomal footprints to call translated regions.

Homepage:

https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/

License:

GPL

Recipe:

/ribotaper/meta.yaml

Links:

biotools: ribotaper, doi: 10.1038/nmeth.3688

package ribotaper

Versions:

1.3.1-0,  1.3.1a-6,  1.3.1a-5,  1.3.1a-4,  1.3.1a-3,  1.3.1a-2,  1.3.1a-1,  1.3.1a-0

Depends:

• bedtools ==2.17.0

• r-ade4

• r-domc

• r-foreach

• r-iterators

• r-multitaper

• r-seqinr

• r-xnomial

• samtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ribotaper

and update with:

conda update ribotaper

or use the docker container:

docker pull quay.io/biocontainers/ribotaper:<tag>

(see ribotaper/tags for valid values for <tag>)

Download stats

Link to this page

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