recipe ribotish

Ribo TIS Hunter (Ribo-TISH) identifies translation activities using ribosome profiling data.

Homepage:

https://github.com/zhpn1024/ribotish

License:

GPL3 / GPL-3.0-or-later

Recipe:

/ribotish/meta.yaml

Links:

doi: 10.1038/s41467-017-01981-8

package ribotish

(downloads) docker_ribotish

versions:

0.2.7-00.2.5-10.2.5-00.2.4-00.2.3-00.2.2-00.2.1-00.2.0-0

depends matplotlib-base:

>=1.4.3

depends numpy:

depends pysam:

>=0.8.3

depends python:

>=3

depends scipy:

>=0.15.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ribotish

and update with::

   mamba update ribotish

To create a new environment, run:

mamba create --name myenvname ribotish

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ribotish:<tag>

(see `ribotish/tags`_ for valid values for ``<tag>``)

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