- recipe ribowaltz
Calculation of optimal P-site offsets, diagnostic analysis and visual inspection of ribosome profiling data.
- package ribowaltz¶
- depends bioconductor-biostrings:
- depends bioconductor-genomicalignments:
- depends bioconductor-genomicfeatures:
- depends bioconductor-genomicranges:
- depends bioconductor-iranges:
- depends r-base:
- depends r-data.table:
- depends r-devtools:
- depends r-ggplot2:
- depends r-ggrepel:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install ribowaltz and update with:: mamba update ribowaltz
To create a new environment, run:
mamba create --name myenvname ribowaltz
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/ribowaltz:<tag> (see `ribowaltz/tags`_ for valid values for ``<tag>``)