recipe rkp

Relative K-mer Project

Homepage

https://gitlab.com/microbial_genomics/relative-kmer-project

License

GPL3 / GNU General Public v3 (GPLv3)

Recipe

/rkp/meta.yaml

package rkp

Versions

0.1.0-0

Depends

• argparse >=1.4.0

• bedops >=2.4.37

• bedtools >=2.29.2

• biopython >=1.76

• blast >=2.9.0

• bowtie2 >=2.3.5

• kmc >=3.1.1

• matplotlib-base >=3.1.2

• numpy >=1.17.3

• pandas >=0.25.3

• python >=3.6

• r >=3.6

• r-gplots >=3.0.1.1

• r-pheatmap >=1.0.12

• samtools >=1.10

• seqkit >=0.11.0

• tqdm >=4.41.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rkp

and update with:

conda update rkp

or use the docker container:

docker pull quay.io/biocontainers/rkp:<tag>

(see rkp/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rkp/README.html)