- recipe rmats
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.
- Homepage:
- License:
Free for non-commercial use, see LICENSE file
- Recipe:
- package rmats¶
- versions:
4.3.0-3,4.3.0-2,4.3.0-1,4.3.0-0,4.2.0-0,4.1.2-5,4.1.2-4,4.1.2-3,4.1.2-2,4.3.0-3,4.3.0-2,4.3.0-1,4.3.0-0,4.2.0-0,4.1.2-5,4.1.2-4,4.1.2-3,4.1.2-2,4.1.2-1,4.1.2-0,4.1.1-1,4.1.1-0,4.1.0-4,4.1.0-3,4.1.0-2,4.1.0-1,4.1.0-0,4.0.2-4,4.0.2-3,4.0.2-2,4.0.2-1,4.0.2-0,3.2.5-2,3.2.5-1,3.2.5-0,3.2.2beta-0- depends _openmp_mutex:
>=4.5- depends gsl:
2.5.*- depends gsl:
>=2.5,<2.6.0a0- depends libblas:
>=3.9.0,<4.0a0- depends libgcc:
>=12- depends libgfortran:
- depends libgfortran5:
>=12.4.0- depends liblapack:
>=3.9.0,<4.0a0- depends libstdcxx:
>=12- depends libzlib:
>=1.2.13,<2.0a0- depends numpy:
>=1.22.4,<2.0a0- depends python:
>=3.10,<3.11.0a0- depends python_abi:
3.10.* *_cp310- depends star:
>=2.5- depends zlib:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install rmats and update with:: mamba update rmats
To create a new environment, run:
mamba create --name myenvname rmats
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/rmats:<tag> (see `rmats/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/rmats/README.html)
