recipe rmblast

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST+ suite.

Homepage

http://www.repeatmasker.org/RMBlast.html

License

OSL-2.1

Recipe

/rmblast/meta.yaml

package rmblast

Versions

2.9.0-0,  2.6.0-0,  2.2.28-4,  2.2.28-3,  2.2.28-2

Depends

• bzip2 >=1.0.8,<2.0a0

• curl

• entrez-direct

• gnutls >=3.5.19,<3.6.0a0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• nettle >=3.3,<3.4.0a0

• pcre >=8.41,<9.0a0

• perl

• perl-archive-tar

• perl-json

• perl-list-moreutils

• zlib >=1.2.11,<1.3.0a0

Required By

• maker

• repeatmasker

• repeatmodeler

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rmblast

and update with:

conda update rmblast

or use the docker container:

docker pull quay.io/biocontainers/rmblast:<tag>

(see rmblast/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rmblast/README.html)