recipe rmblast

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST+ suite.

Homepage:

https://www.repeatmasker.org/rmblast

License:

OSL-2.1

Recipe:

/rmblast/meta.yaml

Links:

biotools: rmblast

package rmblast

versions:

2.14.1-2,  2.14.1-1,  2.14.1-0,  2.14.0-2,  2.14.0-1,  2.14.0-0,  2.13.0-1,  2.13.0-0,  2.11.0-0, 

2.14.1-2,  2.14.1-1,  2.14.1-0,  2.14.0-2,  2.14.0-1,  2.14.0-0,  2.13.0-1,  2.13.0-0,  2.11.0-0,  2.10.0-0,  2.9.0-0,  2.6.0-0,  2.2.28-4,  2.2.28-3,  2.2.28-2

depends bzip2:

>=1.0.8,<2.0a0

depends entrez-direct:

>=22.4,<23.0a0

depends libgcc:

>=13

depends libsqlite:

>=3.49.1,<4.0a0

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends ncbi-vdb:

>=3.2.1,<4.0a0

depends perl:

depends perl-archive-tar:

depends perl-json:

depends perl-list-moreutils:

depends zstd:

>=1.5.7,<1.6.0a0

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rmblast

and update with::

   mamba update rmblast

To create a new environment, run:

mamba create --name myenvname rmblast

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rmblast:<tag>

(see `rmblast/tags`_ for valid values for ``<tag>``)

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