recipe rna-cd

RNA contamination detector

Homepage:

https://github.com/LUMC/rna_cd

Documentation:

https://rna-cd.readthedocs.io/en/latest/

License:

AGPL / GNU Affero General Public v3 or later (AGPLv3+)

Recipe:

/rna-cd/meta.yaml

package rna-cd

versions:

0.2.0-0,  0.1.0-0

depends click:

depends joblib:

depends matplotlib:

depends pysam:

depends python:

>=3.5

depends scikit-learn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rna-cd

and update with::

   mamba update rna-cd

To create a new environment, run:

mamba create --name myenvname rna-cd

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rna-cd:<tag>

(see `rna-cd/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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