recipe rnachipintegrator

Analyse genes against peak data, and vice versa

Homepage:

https://github.com/fls-bioinformatics-core/RnaChipIntegrator

Documentation:

https://rnachipintegrator.readthedocs.io

License:

OTHER / Artistic License

Recipe:

/rnachipintegrator/meta.yaml

RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify the genes nearest to each peak, and vice versa

package rnachipintegrator

(downloads) docker_rnachipintegrator

versions:

3.0.0-0,  2.0.0-1,  2.0.0-0,  1.2.0-0,  1.1.0-0,  1.0.3-1,  1.0.3-0

depends python:

depends xlsxwriter:

>=0.8.4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rnachipintegrator

and update with::

   mamba update rnachipintegrator

To create a new environment, run:

mamba create --name myenvname rnachipintegrator

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rnachipintegrator:<tag>

(see `rnachipintegrator/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rnachipintegrator/README.html)