recipe rnalien

A tool for unsupervised construction of RNA family models

Homepage:

http://rna.tbi.univie.ac.at/rnalien/tool

License:

GPL-3

Recipe:

/rnalien/meta.yaml

Links:

biotools: RNAlien, doi: 10.1093/nar/gkw558

package rnalien

versions:

1.8.0-2,  1.8.0-1,  1.8.0-0,  1.7.1-0,  1.7.0-0,  1.6.0-0,  1.3.8-5,  1.3.7-5,  1.3.7-4, 

1.8.0-2,  1.8.0-1,  1.8.0-0,  1.7.1-0,  1.7.0-0,  1.6.0-0,  1.3.8-5,  1.3.7-5,  1.3.7-4,  1.3.7-3,  1.3.7-2,  1.3.7-1,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.2.5-0

depends blast:

2.9.0

depends ca-certificates:

depends entrez-direct:

depends gmp:

depends infernal:

1.1.2

depends locarna:

2.0.0RC8

depends openssl:

>=1.1.0,<=1.1.1

depends perl:

depends rnacode:

0.3

depends rnaz:

2.1.1

depends viennarna:

2.4.13

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rnalien

and update with::

   mamba update rnalien

To create a new environment, run:

mamba create --name myenvname rnalien

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rnalien:<tag>

(see `rnalien/tags`_ for valid values for ``<tag>``)

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