recipe rnaprot

Modelling RBP binding preferences to predict RPB binding sites

Homepage:

https://github.com/BackofenLab/RNAProt

License:

MIT

Recipe:

/rnaprot/meta.yaml

package rnaprot

Versions:

0.5-1,  0.5-0,  0.4-0,  0.3-0

Depends:

• bedtools

• hpbandster

• logomaker

• markdown <=3.2.2

• plotly

• python >=3.8

• pytorch >=1.8

• scikit-learn

• seaborn

• ucsc-bigwigaverageoverbed

• ucsc-twobitinfo

• ucsc-twobittofa

• ushuffle

• viennarna

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rnaprot

and update with:

conda update rnaprot

or use the docker container:

docker pull quay.io/biocontainers/rnaprot:<tag>

(see rnaprot/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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