- recipe rnaprot
Modelling RBP binding preferences to predict RPB binding sites
- Homepage:
- License:
MIT
- Recipe:
- package rnaprot¶
- versions:
0.5-1
,0.5-0
,0.4-0
,0.3-0
- depends bedtools:
- depends hpbandster:
- depends logomaker:
- depends markdown:
<=3.2.2
- depends plotly:
- depends python:
>=3.8
- depends pytorch:
>=1.8
- depends scikit-learn:
- depends seaborn:
- depends ucsc-bigwigaverageoverbed:
- depends ucsc-twobitinfo:
- depends ucsc-twobittofa:
- depends ushuffle:
- depends viennarna:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install rnaprot and update with:: mamba update rnaprot
To create a new environment, run:
mamba create --name myenvname rnaprot
with
myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/rnaprot:<tag> (see `rnaprot/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rnaprot/README.html)