recipe rnaquast

rnaQUAST is a tool for evaluating RNA-Seq assemblies using reference genome and gene database. In addition, rnaQUAST is also capable of estimating gene database coverage by raw reads and de novo quality assessment using third-party software.

Homepage:

http://cab.spbu.ru/software/rnaquast/

License:

GPLv2

Recipe:

/rnaquast/meta.yaml

package rnaquast

Versions:

2.2.3-0,  2.2.1-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.1.0-1,  2.1.0-0,  2.0.1-0,  2.0.0-0, 

2.2.3-0,  2.2.1-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.1.0-1,  2.1.0-0,  2.0.1-0,  2.0.0-0,  1.5.1-0

Depends:

• blast

• blat

• busco >=5

• emboss

• gffutils

• gmap <2021.02.22,>=2020.03.12

• joblib

• matplotlib-base

• python

• samtools

• star

• ucsc-pslsort

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rnaquast

and update with:

conda update rnaquast

or use the docker container:

docker pull quay.io/biocontainers/rnaquast:<tag>

(see rnaquast/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rnaquast/README.html)