recipe rnaquast

rnaQUAST is a tool for evaluating RNA-Seq assemblies using reference genome and gene database. In addition, rnaQUAST is also capable of estimating gene database coverage by raw reads and de novo quality assessment using third-party software.

Homepage

http://cab.spbu.ru/software/rnaquast/

License

GPLv2

Recipe

/rnaquast/meta.yaml

package rnaquast

Versions

1.5.1-0

Depends

• blast

• blat

• busco >=2

• emboss

• gffutils

• gmap

• joblib

• matplotlib

• python <3

• samtools

• star

• tophat

• ucsc-pslsort

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rnaquast

and update with:

conda update rnaquast

or use the docker container:

docker pull quay.io/biocontainers/rnaquast:<tag>

(see rnaquast/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rnaquast/README.html)